Ryo Yoshida Lab

2020.10. Bristol-ISM Data Science Seminar Series, online seminar, "Machine Learning for Materials Discovery", (R. Yoshida).

2020.1. 2020 I2CNER-IMI International workshop on applied math for energy, Fukuoka, Japan, "Materials informatics: state-of-the-art and future perspectives", (R. Yoshida).

2019.12. Materials Research Meeting 2019 (MRM2019), Yokohama, Japan, "Breaking the Curse of Small Data in Materials Informatics", (R. Yoshida).

2019.7. The 4th Eastern Asia Chapter Meeting on Bayesian Statistics, EAC-ISBA2019, 神戸大学六甲台第1キャンパス, Session 4b “Bayesian Methods and Their Applications”, (Chair: Tomoyuki Higuchi, Speakers: Takemi Yanagimoto, Daichi Mochihashi, Ryo Yoshida).

2019.5. 2nd International Conference on Data Driven Plasma Science , Marseille, France, "Machine learning for materials design and discovery: how do we learn from little?",（R. Yoshida).

2019.2. ICMMA2018 , Tokyo, Japan, "Machine Learning for Accelerated Materials Discovery",（R. Yoshida).

2018.10. 10th International Workshop on Combinatorial Materials Science and Technology (COMBI2018) , Yokohama, Japan, "Accelerated Materials Discovery Powered by Machine Learning",（R. Yoshida).

2018.8. The 10th MEI3 Center International Symposium , Suita, Japan, "Frontiers of Applied Bayesian Inference",（R. Yoshida).

2018.5. 6th International IBM Cloud Academy Conference 2018 , Tokyo, Japan, "Materials Informatics: State-of-the-Art and Future Perspectives",（R. Yoshida).

2018.3. 255th ACS National Meeting , New Orleans, USA, "Inverse design of novel polymeric materials through Bayesian machine learning and experimental design algorithms",（R. Yoshida).

2017.11. Advances in Neuroinformatics (AINI) 2017 , Tsukuba, Japan, "Materials Informatics: an emerging interdisciplinary field of materials science",（R. Yoshida).

2017.11. The 16th International Symposium on Molecular and Neural Mechanisms of Taste and Olfactory Perception , Fukuoka, Japan, "How taste preference is modulated in the nematode",（Y. Iino*, T. Nagashima, H. Sato, MS. Jang, S. Oe, Y. Toyoshima, M. Tomioka, H. Kunitomo, S. Wu, R. Yoshida, Y. Iwasaki, T. Ishihara).

2017.4. International Workshop on Quantitative Biology 2017, Yokohama, Japan, "Whole neural network analysis of C. elegans using an automated image processing pipeline",（S. Wu). (invited)

2017.4. International Workshop of Materials Informatics and Materials Data (MIMD), Tsukuba, Japan, "Inverse design of functional materials:advanced machine learning techniques coupled to computational experiments", (G. Lambard*, S. Wu, R. Yoshida). (invited)

2017.3. Simulations Encounter with Data Science Data Assimilation, Emulators, Rare Events and Design, Tachikawa, Japan, "Inverse design of functional materials through computer experiments and machine learning", (R. Yoshida). (invited)

2017.1. ISM-ZIB-IMI Joint Workshop on Optimization and Data-intensive High Performance Computing, Tokyo, Japan, "Inverse design of functional materials through computer experiments and machine learning", (R. Yoshida). (invited)

2016.10. BioImage Informatics Conference 2016, Singapore, "A machine learning pipeline for whole brain imaging of Caenorhabditis elegans: cell tracking, quantification, annotation and visualizations", (S. Wu*, T. Tokunaga, O. Hirose, Y. Toyoshima, T. Teramoto, Y. Iwasaki, T. Ishihara, Y. Iino, R. Yoshida).

2016.7. Seventh Joint Sheffield Conference on Chemoinformatics (SHEFFIELD 2016), Sheffield, UK, "A Bayesian algorithm for finding novel small organic molecules", (R. Yoshida*, H. Ikebata, K. Hongo, R. Maezono, T. Isomura).

2016.2. Waseda International Symposium, Tokyo, Japan, "Bayesian approach towards data science driven materials discovery", (R. Yoshida). (invited)

2015.10. BioImage Informatics Conference 2015, Gaithersburg, USA, "SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter", (O. Hirose*, S. Kawaguchi, T. Tokunaga, T. Teramoto, S. Kuge, T. Ishihara, Y. Toyoshima, Y. Iino, R. Yoshida).

2015.9. GIW/InCoB 2015, Tokyo, Japan, "SPF-CellTracker: Tracking multiple cells with strongly-correlated moves using a spatial particle filter", (O. Hirose*, S. Kawaguchi, T. Tokunaga, T. Teramoto, S. Kuge, T. Ishihara, Y. Toyoshima, Y. Iino, R. Yoshida).

2015.3. Wiring the Brain, New York, USA, "Whole-brain imaging of C. elegans reveals multi-neuronal dynamics under non-stimulus condition", (T. Teramoto*, T. Tokunaga, O. Hirose, Y. Toyoshima, Y. Iino, R. Yoshida, T. Ishihara).

2014.7. C.elegans Topic Meeting: Neuronal Development, Synaptic Function & Behavior, Madison, USA, "4-D imaging of neuronal activities in the whole central nervous system visualizes correlative patterns between multiple neuron", (T. Teramoto*, Y. Toyoshima, T. Tokunaga, R. Yoshida, Y. Iino, T. Ishihara).

2014.7. 22nd Annual International Conference on Intelligent Systems for Molecular Biology (ISMB2014), Boston, USA, "Automated detection and tracking of many cells by using 4D live-cell imaging data", (T. Tokunaga*, O. Hirose, S. Kawaguchi, Y. Toyoshima, T. Teramoto, H. Ikebata, S. Kuge, T. Ishihara, Y. Iino, R. Yoshida).

2014.1. Cooperation of Computation Materials Science and Mathematics toward Smart Materials Design, Tokyo, Japan, "Bayesian statistics for data assimilation", (R. Yoshida). (invited)

2013.11. Forum "Math-for-Industry" 2013, Fukuoka, Japan, "Bayesian statistics for designing systems, molecules and others", (R. Yoshida). (invited)

2013.8. Joint Statistical Meeting 2013, Montreal, Canada, "Preimage reconstruction of molecules with a graph kernel", (R. Yoshida*, H. Yamashita, Y. Iba, T. Higuchi).

2013.8. Joint Statistical Meeting 2013, Montreal, Canada, "Repulsive parallel MCMC for motif discovery", (H. Ikebata*, R. Yoshida).

2012.6. ISBA 2012, Kyoto, Japan, "Bayesian sparse reconstruction: Latent factor analysis of gene regulatory programs", (R. Yoshida).

2012.6. BayesComp 2012, Tokyo, Japan, "Bayesian robust networking", (R. Yoshida). (invited)

2011.12. Joint Meeting of The 2011 Taipei International Statistical Symposium and 7th Conference of The Asian Regional Section of the IASC (YIRCoBL 2011), Taipei, Taiwan, "Bayesian supercomputing tackles cancers", (R. Yoshida).

2011.6. Yeditepe International Research Conference on Bayesian Learning (YIRCoBL 2011), Istanbul, Turky, "Dynamic Bayesian modelling of biological pathways and decoupling of hidden regulatory signals using nonlinear state space models", (R. Yoshida*, H. Nagao, M. Saito, T. Higuchi).

2011.6. Yeditepe International Research Conference on Bayesian Learning (YIRCoBL 2011), Istanbul, Turky, " Hybrid Bayesian filter algorithm for multivariate time-series modellings on cloud computing systems", (H. Nagao*, R. Yoshida, T. Higuchi).

2010.9. 9th European Conference on Computational Biology (ECCB 2010), Ghent, Belgium, "Bayesian experts in exploring reaction kinetics of transcription circuits", (R. Yoshida*, M. Saito, H. Nagao, and T. Higuchi).

2010.9. 2010 Asia-Pacific Radio Science Conference (AP-RASC'10), Toyama, Japan, "Easy and simple methods to estimate parameter values in the numerical simulation model for sequential data assimilation", (T. Higuchi*, R. Yoshida).

2010.8. 13th International Conference on Information Fusion (FUSION 2010), Edinburgh, UK, "Implementation of sequential importance sampling in GPGPU", (K. Hayashi, M. Saito*, R. Yoshida, T. Higuchi).

2009.8. 2009 Joint Statistical Meetings (JSM 2009), Washington, DC, USA, "Sparse Bayes learning by annealing entropy", (R. Yoshida*, M. West).

2008.8. 9th International Conference on Systems Biology (ICSB 2008), Gothenburg, Sweden, "Exploring biological processes with pathway simulations by data assimilation approach", (R. Yamaguchi*, R. Yoshida, M. Nagasaki, S. Imoto, T. Shimamura, M. Yamauchi, T. Higuchi, N. Gotoh, S. Miyano). (invited)

2008.6. International Conference on Multivariate Statistical Modelling & High Dimensional Data Mining (HDM) 2008, Kayseri, Turkey, "Mixed factors analysis: unsupervized statistical discrimination with kernel feature extraction", (R. Yoshida). (invited)

2008.5. 2nd Asia International Conference on Modelling & Simulation, Malaysia, "Analyzing time course gene expression data with biological and technical replicates to estimate gene networks by state space models", (O. Hirose, R. Yoshida, R. Yamaguchi, S. Imoto*, T. Higuchi, S. Miyano).

2007.11. Workshop on Destruction: Mathematical Modeling of Tsunami Waves and Cracks Propagation (The 21th Century COE Program, Center for Integrative Mathematical Sciences, Faculty of Science and Technology, Keio University; Yokohama, Japan, "Statistical inference of biological molecular network on genomic data assimilation", (R. Yoshida). (invited)

2007.11. The 1st Joint Meeting between Institute of Statistical Science, Academia Sinica and the Institue of Statistical Mathematics, Tokyo, Japan, "Genomic data assimilation for inferring gene regulatory networks from gene expression profiles", (R. Yoshida).

2007.11. International Workshop on the Interface between Statistical Causal Inference and Bayesian Networks, Tokyo, Japan, "Bayesian learning of biological pathways on genomic data assimilation", (R. Yoshida). (invited)

2007.10. IEEE 7th International Symposium on Bioinformatics and Bioengineering (BIBE) 2007, Boston, USA, "Computational genome-wide discovery of aberrant splice variations with exon expression profiles", (R. Yoshida*, K. Numata, S. Imoto, M. Nagasaki, A. Doi, K. Ueno, S. Miyano).

2007.10. The International Workshop on Data-Mining and Statistical Science (DMSS) 2007, Tokyo, Japan, "Mixed factors analysis: unsupervized statistical discrimination with kernel feature extraction", (R. Yoshida*, T. Higuchi, S. Imoto, S. Miyano).

2007.8. IEEE Statistical Signal Processing Workshop, Madison, USA, "Identification of module-based gene networks from time course gene expression profiles with state space models", (R. Yamaguchi). (invited)

2007.7. The Seventh Annual International Workshop on Bioinformatics and Systems Biology (IBSB2007), Tokyo, Japan, "Clustering with time course gene expression profiles and the mixture of state space models ", (O. Hirose*, R. Yoshida, R. Yamaguchi, S. Imoto, T. Higuchi, S. Miyano).

2007.7. The Seventh Annual International Workshop on Bioinformatics and Systems Biology (IBSB2007), Tokyo, Japan, "Identification of activated transcription factors from microarray gene expression data of Kampo-medicine treated mice", (R. Yamaguchi*, M. Yamamoto, S. Imoto, M. Nagasaki, R. Yoshida, K. Tsuji, A. Ishige, H. Asou, K. Watanabe, S. Miyano).

2007.6. The 2007 IASC-ARS Special Coference, Seoul, Korea, "Identification of module-based gene networks from time course gene expression profiles with state space models", (O. Hirose*, R. Yoshida, R. Yamaguchi, S. Imoto, T. Higuchi, S. Miyano).

2007.5. The International Symposium on Bioinformatics Research and Applications (ISBRA2007), Atlanta, USA, "Statistical absolute evaluation of gene ontology terms with gene expression data", (P.K. Gupta, R. Yoshida*, S. Imoto, R. Yamaguchi, S. Miyano)

2006.12. The 16th International Conference on Genome Informatics (GIW2005), Yokohama, Japan, " Modeling and estimation of dynamic EGFR pathway by data assimulation approach using time series proteomic data", (S. Tasaki*, M. Nagasaki, M. Oyama, H. Hata, K. Ueno, R. Yoshida, T. Higuchi, S. Sugano, S. Miyano).

2006.9. International Workshop on Data-Mining and Statistical Science (DMSS2006), Sapporo, Japan, "Unsupervised learning of n<<p data and its application to bioinformatics", (R. Yoshida*, S. Imoto, T. Higuchi S. Miyano).(invited)

2006.7. International Workshop on Bioinformatics and System Biology, USA, "A statistical framework for genome-wide discovery of biomarker splice variations with GeneChip Human Exon 1.0 ST arrays", (R. Yoshida, K. Numata*, S. Imoto, M. Nagasaki, A. Doi, K. Ueno, S. Miyano).

2006.7. International Workshop on Bioinformatics and System Biology, USA, "Genomic data assimilation for estimating Hybrid Functional Petri Net from time-course gene expression data", (M. Nagasaki, R. Yamaguchi*, R. Yoshida, S. Imoto, A. Doi, Y,Tamada, H. Matsuno, S. Miyano, T. Higuchi).

2006.3. Affymetrix Data Analysis Workshop, Boston, USA, "Comutational genome-wide discovery of tumor-specific splice variants with GeneChip Human Exon 1.0 ST array", (R. Yoshida*, S. Imoto, K. Numata, S. Miyano). (invited)

2006.3. ESF-JSPS Frontier Science Conference Series for Young, Hayama, Japan, "Genome-wide discovery of tissue-specific alternative splicing with all exon microarray", (R. Yoshida*, S. Imoto, K. Numata, S. Miyano).

2005.8. 2005 Joint Statistical Meeting, Minneapolis; Minnesota, USA, "Mixed factors analysis with the application to clustering of DNA microarray experiments", (R. Yoshida*, T. Higuchi, S. Imoto).

2005.5. The 1st International Workshop on Data Mining and Bioinformatics (DMBIO2005), Singapore, "A penalized likelihood estimation on transcriptional module-based clustering", (R. Yoshida*, S. Imoto, T. Higuchi).

2004.10. Factor Analysis Centennial Symposium, Osaka, Japan, "Mixed factors analysis for finding groups in gene expression patterns", (R. Yoshida*, T. Higuchi, S. Imoto). (invited)

2004.8. The 3rd IEEE Computational Systems Bioinformatics (CSB2004), Stanford University, USA, "A mixed factors model for dimension reduction and extraction of a group structure in gene expression data", (R. Yoshida*, T. Higuchi, S. Imoto).